Detailed information of SNP:
|
SNP ID:
sf1125139816(Gbrowse)
Chromosome: chr11 Position: 25139816 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.67% | 43.33% |
| All Indica | 799 | 67.96% | 32.04% |
| All Japonica | 497 | 38.83% | 61.17% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 375 | 52.80% | 47.20% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 22.69% | 77.31% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125139816 | C->T | INTERGENIC | None |