Detailed information of SNP:
|
SNP ID:
sf1125139893(Gbrowse)
Chromosome: chr11 Position: 25139893 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 80.89% | 19.11% |
| All Indica | 799 | 73.97% | 26.03% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 56.00% | 44.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125139893 | C->T | INTERGENIC | None |