Detailed information of SNP:
|
SNP ID:
sf1125141402(Gbrowse)
Chromosome: chr11 Position: 25141402 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.44% | 34.56% |
| All Indica | 798 | 73.06% | 26.94% |
| All Japonica | 497 | 54.73% | 45.27% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 73.13% | 26.87% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125141402 | C->T | INTERGENIC | None |