Detailed information of SNP:
|
SNP ID:
sf1125143449(Gbrowse)
Chromosome: chr11 Position: 25143449 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.87% | 48.13% |
| All Indica | 799 | 27.66% | 72.34% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 375 | 44.80% | 55.20% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 17.06% | 82.94% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125143449 | A->G | INTERGENIC | None |