Detailed information of SNP:
|
SNP ID:
sf1125143598(Gbrowse)
Chromosome: chr11 Position: 25143598 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.10% | 18.90% |
| All Indica | 798 | 73.56% | 26.44% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 55.47% | 44.53% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125143598 | C->A | INTERGENIC | None |