Detailed information of SNP:
|
SNP ID:
sf1125143629(Gbrowse)
Chromosome: chr11 Position: 25143629 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 66.03% | 33.97% |
| All Indica | 799 | 50.44% | 49.56% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 24.41% | 75.59% |
| Indica Intermediate | 211 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125143629 | T->C | INTERGENIC | None |