Detailed information of SNP:
|
SNP ID:
sf1125148854(Gbrowse)
Chromosome: chr11 Position: 25148854 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 80.55% | 19.45% |
| All Indica | 799 | 68.46% | 31.54% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 65.33% | 34.67% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125148854 | C->A | LOC_Os11g42540(LOC_Os11g42540.2) | INTRON |
| sf1125148854 | C->A | LOC_Os11g42540(LOC_Os11g42540.1) | INTRON |