Detailed information of SNP:
|
SNP ID:
sf1125149483(Gbrowse)
Chromosome: chr11 Position: 25149483 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 78.97% | 21.03% |
| All Indica | 797 | 64.62% | 35.38% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 55.35% | 44.65% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125149483 | T->C | LOC_Os11g42540(LOC_Os11g42540.2) | INTRON |
| sf1125149483 | T->C | LOC_Os11g42540(LOC_Os11g42540.1) | INTRON |