Detailed information of SNP:
|
SNP ID:
sf1125149678(Gbrowse)
Chromosome: chr11 Position: 25149678 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 72.97% | 27.03% |
| All Indica | 797 | 72.52% | 27.48% |
| All Japonica | 497 | 72.64% | 27.36% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 58.40% | 41.60% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 72.24% | 27.76% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125149678 | T->G | LOC_Os11g42540(LOC_Os11g42540.2) | INTRON |
| sf1125149678 | T->G | LOC_Os11g42540(LOC_Os11g42540.1) | INTRON |