Detailed information of SNP:
|
SNP ID:
sf1125155057(Gbrowse)
Chromosome: chr11 Position: 25155057 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.11% | 8.89% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125155057 | C->T | LOC_Os11g42570(LOC_Os11g42570.1) | INTRON |