Detailed information of SNP:



SNP ID: sf1125155057(Gbrowse)

Chromosome: chr11

Position: 25155057
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 91.11% 8.89%
All Indica799 86.48% 13.52%
All Japonica497 99.80% 0.20%
Aus66 84.85% 15.15%
Indica I375 87.47% 12.53%
Indica II213 92.02% 7.98%
Indica Intermediate211 79.15% 20.85%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1125155057 C->T LOC_Os11g42570(LOC_Os11g42570.1) INTRON