Detailed information of SNP:
|
SNP ID:
sf1125156050(Gbrowse)
Chromosome: chr11 Position: 25156050 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 80.54% | 19.46% |
| All Indica | 796 | 71.61% | 28.39% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 59 | 76.27% | 23.73% |
| Indica I | 374 | 82.09% | 17.91% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 209 | 46.41% | 53.59% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125156050 | C->T | INTERGENIC | None |