Detailed information of SNP:



SNP ID: sf1125162329(Gbrowse)

Chromosome: chr11

Position: 25162329
Major allele: C

Minor allele: G

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of G(minor allele)
All1418 71.30% 28.70%
All Indica798 78.70% 21.30%
All Japonica497 60.56% 39.44%
Aus67 82.09% 17.91%
Indica I375 93.33% 6.67%
Indica II212 46.70% 53.30%
Indica Intermediate211 84.83% 15.17%
Temperate Japonica335 75.22% 24.78%
Tropical Japonica94 25.53% 74.47%
Japonica Intermediate68 36.76% 63.24%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 64.29% 35.71%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1125162329 C->G LOC_Os11g42580(LOC_Os11g42580.1) Non-Synonymous SNP