Detailed information of SNP:
|
SNP ID:
sf1125162329(Gbrowse)
Chromosome: chr11 Position: 25162329 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 71.30% | 28.70% |
| All Indica | 798 | 78.70% | 21.30% |
| All Japonica | 497 | 60.56% | 39.44% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 46.70% | 53.30% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 75.22% | 24.78% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125162329 | C->G | LOC_Os11g42580(LOC_Os11g42580.1) | Non-Synonymous SNP |