Detailed information of SNP:
|
SNP ID:
sf1125167719(Gbrowse)
Chromosome: chr11 Position: 25167719 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1249 | 84.31% | 15.69% |
| All Indica | 637 | 73.00% | 27.00% |
| All Japonica | 493 | 96.35% | 3.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 258 | 95.35% | 4.65% |
| Indica II | 180 | 28.89% | 71.11% |
| Indica Intermediate | 199 | 83.92% | 16.08% |
| Temperate Japonica | 332 | 97.89% | 2.11% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125167719 | G->T | LOC_Os11g42590(LOC_Os11g42590.1) | Non-Synonymous SNP |