Detailed information of SNP:
|
SNP ID:
sf1125170747(Gbrowse)
Chromosome: chr11 Position: 25170747 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 79.69% | 20.31% |
| All Indica | 693 | 92.21% | 7.79% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 368 | 97.55% | 2.45% |
| Indica II | 135 | 78.52% | 21.48% |
| Indica Intermediate | 190 | 91.58% | 8.42% |
| Temperate Japonica | 335 | 77.91% | 22.09% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125170747 | G->A | LOC_Os11g42590(LOC_Os11g42590.1) | INTRON |