Detailed information of SNP:
|
SNP ID:
sf1125173625(Gbrowse)
Chromosome: chr11 Position: 25173625 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 56.98% | 43.02% |
| All Indica | 790 | 79.49% | 20.51% |
| All Japonica | 484 | 21.90% | 78.10% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 371 | 83.29% | 16.71% |
| Indica II | 210 | 62.86% | 37.14% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 325 | 11.38% | 88.62% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125173625 | T->C | INTERGENIC | None |