Detailed information of SNP:
|
SNP ID:
sf1125192654(Gbrowse)
Chromosome: chr11 Position: 25192654 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 70.43% | 29.57% |
| All Indica | 791 | 56.13% | 43.87% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 72.12% | 27.88% |
| Indica II | 211 | 26.54% | 73.46% |
| Indica Intermediate | 207 | 57.49% | 42.51% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125192654 | A->G | LOC_Os11g42620(LOC_Os11g42620.1) | INTRON |