Detailed information of SNP:
|
SNP ID:
sf1125197536(Gbrowse)
Chromosome: chr11 Position: 25197536 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 88.85% | 11.15% |
| All Indica | 788 | 81.47% | 18.53% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 71.12% | 28.88% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125197536 | T->A | INTERGENIC | None |