Detailed information of SNP:
|
SNP ID:
sf1125203684(Gbrowse)
Chromosome: chr11 Position: 25203684 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 78.28% | 21.72% |
| All Indica | 789 | 67.30% | 32.70% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 56.95% | 43.05% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 209 | 74.16% | 25.84% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125203684 | A->G | LOC_Os11g42630(LOC_Os11g42630.1) | Synonymous |