Detailed information of SNP:
|
SNP ID:
sf1125203725(Gbrowse)
Chromosome: chr11 Position: 25203725 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 76.05% | 23.95% |
| All Indica | 792 | 67.68% | 32.32% |
| All Japonica | 489 | 90.18% | 9.82% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 370 | 57.57% | 42.43% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 330 | 92.73% | 7.27% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125203725 | G->C | LOC_Os11g42630(LOC_Os11g42630.1) | Non-Synonymous SNP |