Detailed information of SNP:
|
SNP ID:
sf1125203969(Gbrowse)
Chromosome: chr11 Position: 25203969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 97.37% | 2.63% |
| All Indica | 794 | 97.36% | 2.64% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125203969 | G->A | LOC_Os11g42630(LOC_Os11g42630.1) | Synonymous |