Detailed information of SNP:
|
SNP ID:
sf1125204779(Gbrowse)
Chromosome: chr11 Position: 25204779 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 92.86% | 7.14% |
| All Indica | 773 | 94.18% | 5.82% |
| All Japonica | 469 | 91.26% | 8.74% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 365 | 97.26% | 2.74% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 198 | 91.41% | 8.59% |
| Temperate Japonica | 324 | 95.99% | 4.01% |
| Tropical Japonica | 80 | 76.25% | 23.75% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125204779 | A->G | LOC_Os11g42630(LOC_Os11g42630.1) | Non-Synonymous SNP |