Detailed information of SNP:
|
SNP ID:
sf1125209420(Gbrowse)
Chromosome: chr11 Position: 25209420 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 94.70% | 5.30% |
| All Indica | 796 | 92.71% | 7.29% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 89.01% | 10.99% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125209420 | A->G | LOC_Os11g42640(LOC_Os11g42640.1) | Synonymous |