Detailed information of SNP:
|
SNP ID:
sf1125213046(Gbrowse)
Chromosome: chr11 Position: 25213046 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 71.80% | 28.20% |
| All Indica | 790 | 74.43% | 25.57% |
| All Japonica | 485 | 71.75% | 28.25% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 368 | 80.98% | 19.02% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 326 | 83.44% | 16.56% |
| Tropical Japonica | 91 | 43.96% | 56.04% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125213046 | C->T | LOC_Os11g42650(LOC_Os11g42650.1) | INTRON |