Detailed information of SNP:
|
SNP ID:
sf1125234411(Gbrowse)
Chromosome: chr11 Position: 25234411 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1364 | 73.24% | 26.76% |
| All Indica | 760 | 65.66% | 34.34% |
| All Japonica | 487 | 88.91% | 11.09% |
| Aus | 64 | 57.81% | 42.19% |
| Indica I | 358 | 70.11% | 29.89% |
| Indica II | 197 | 67.01% | 32.99% |
| Indica Intermediate | 205 | 56.59% | 43.41% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 89 | 65.17% | 34.83% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125234411 | A->G | INTERGENIC | None |