Detailed information of SNP:
|
SNP ID:
sf1125241414(Gbrowse)
Chromosome: chr11 Position: 25241414 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1290 | 66.20% | 33.80% |
| All Indica | 724 | 58.70% | 41.30% |
| All Japonica | 450 | 81.78% | 18.22% |
| Aus | 62 | 56.45% | 43.55% |
| Indica I | 334 | 73.05% | 26.95% |
| Indica II | 200 | 47.50% | 52.50% |
| Indica Intermediate | 190 | 45.26% | 54.74% |
| Temperate Japonica | 299 | 90.64% | 9.36% |
| Tropical Japonica | 87 | 60.92% | 39.08% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125241414 | G->T | INTERGENIC | None |