Detailed information of SNP:
|
SNP ID:
sf1125269129(Gbrowse)
Chromosome: chr11 Position: 25269129 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 52.58% | 47.42% |
| All Indica | 784 | 49.74% | 50.26% |
| All Japonica | 494 | 57.49% | 42.51% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 372 | 41.13% | 58.87% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 200 | 47.00% | 53.00% |
| Temperate Japonica | 332 | 46.69% | 53.31% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125269129 | C->T | LOC_Os11g42720(LOC_Os11g42720.1) | Synonymous |