Detailed information of SNP:
|
SNP ID:
sf1125274441(Gbrowse)
Chromosome: chr11 Position: 25274441 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 92.77% | 7.23% |
| All Indica | 795 | 89.81% | 10.19% |
| All Japonica | 494 | 97.57% | 2.43% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 70.75% | 29.25% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125274441 | C->A | INTERGENIC | None |