Detailed information of SNP:
|
SNP ID:
sf1125297703(Gbrowse)
Chromosome: chr11 Position: 25297703 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 53.14% | 46.86% |
| All Indica | 798 | 49.37% | 50.63% |
| All Japonica | 494 | 61.94% | 38.06% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 213 | 22.07% | 77.93% |
| Indica Intermediate | 210 | 30.00% | 70.00% |
| Temperate Japonica | 334 | 78.74% | 21.26% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125297703 | C->T | INTERGENIC | None |