Detailed information of SNP:
|
SNP ID:
sf1125301871(Gbrowse)
Chromosome: chr11 Position: 25301871 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 81.98% | 18.02% |
| All Indica | 799 | 75.34% | 24.66% |
| All Japonica | 493 | 89.86% | 10.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 332 | 88.86% | 11.14% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125301871 | C->T | INTERGENIC | None |