Detailed information of SNP:
|
SNP ID:
sf1125302018(Gbrowse)
Chromosome: chr11 Position: 25302018 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 76.16% | 23.84% |
| All Indica | 798 | 81.08% | 18.92% |
| All Japonica | 497 | 68.21% | 31.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 48.58% | 51.42% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125302018 | G->A | INTERGENIC | None |