Detailed information of SNP:
|
SNP ID:
sf1125306860(Gbrowse)
Chromosome: chr11 Position: 25306860 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 96.89% | 3.11% |
| All Indica | 794 | 94.71% | 5.29% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125306860 | G->C | INTERGENIC | None |