Detailed information of SNP:
|
SNP ID:
sf1125316134(Gbrowse)
Chromosome: chr11 Position: 25316134 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.45% | 31.55% |
| All Indica | 797 | 51.44% | 48.56% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 58.67% | 41.33% |
| Indica II | 213 | 24.41% | 75.59% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125316134 | A->T | INTERGENIC | None |