Detailed information of SNP:
|
SNP ID:
sf1125319578(Gbrowse)
Chromosome: chr11 Position: 25319578 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 77.45% | 22.55% |
| All Indica | 793 | 82.22% | 17.78% |
| All Japonica | 496 | 68.55% | 31.45% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 371 | 94.07% | 5.93% |
| Indica II | 211 | 61.14% | 38.86% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 334 | 83.53% | 16.47% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125319578 | C->T | INTERGENIC | None |