Detailed information of SNP:
|
SNP ID:
sf1125320275(Gbrowse)
Chromosome: chr11 Position: 25320275 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 83.04% | 16.96% |
| All Indica | 789 | 73.76% | 26.24% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 68.22% | 31.78% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125320275 | G->A | LOC_Os11g42810(LOC_Os11g42810.1) | INTRON |