Detailed information of SNP:
|
SNP ID:
sf1125320289(Gbrowse)
Chromosome: chr11 Position: 25320289 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 81.63% | 18.37% |
| All Indica | 796 | 72.11% | 27.89% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 65.42% | 34.58% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125320289 | G->A | LOC_Os11g42810(LOC_Os11g42810.1) | INTRON |