Detailed information of SNP:
|
SNP ID:
sf1125325244(Gbrowse)
Chromosome: chr11 Position: 25325244 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 67.26% | 32.74% |
| All Indica | 788 | 68.91% | 31.09% |
| All Japonica | 497 | 63.58% | 36.42% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 62.97% | 37.03% |
| Indica II | 208 | 62.98% | 37.02% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125325244 | A->T | INTERGENIC | None |