Detailed information of SNP:
|
SNP ID:
sf1125329102(Gbrowse)
Chromosome: chr11 Position: 25329102 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 65.30% | 34.70% |
| All Indica | 772 | 75.91% | 24.09% |
| All Japonica | 496 | 47.78% | 52.22% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 360 | 60.00% | 40.00% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 203 | 84.24% | 15.76% |
| Temperate Japonica | 334 | 29.94% | 70.06% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125329102 | T->C | LOC_Os11g42830(LOC_Os11g42830.1) | Non-Synonymous SNP |