Detailed information of SNP:



SNP ID: sf1125329102(Gbrowse)

Chromosome: chr11

Position: 25329102
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1389 65.30% 34.70%
All Indica772 75.91% 24.09%
All Japonica496 47.78% 52.22%
Aus67 50.75% 49.25%
Indica I360 60.00% 40.00%
Indica II209 95.22% 4.78%
Indica Intermediate203 84.24% 15.76%
Temperate Japonica334 29.94% 70.06%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 72.06% 27.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 90.00% 10.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1125329102 T->C LOC_Os11g42830(LOC_Os11g42830.1) Non-Synonymous SNP