Detailed information of SNP:
|
SNP ID:
sf1125331768(Gbrowse)
Chromosome: chr11 Position: 25331768 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.86% | 17.14% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 70.82% | 29.18% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125331768 | C->T | INTERGENIC | None |