Detailed information of SNP:
|
SNP ID:
sf1125334536(Gbrowse)
Chromosome: chr11 Position: 25334536 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 92.88% | 7.12% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125334536 | A->G | LOC_Os11g42840(LOC_Os11g42840.1) | INTRON |