Detailed information of SNP:
|
SNP ID:
sf1125346041(Gbrowse)
Chromosome: chr11 Position: 25346041 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 75.71% | 24.29% |
| All Indica | 794 | 62.47% | 37.53% |
| All Japonica | 495 | 93.94% | 6.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 53.76% | 46.24% |
| Indica II | 212 | 68.40% | 31.60% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125346041 | T->C | LOC_Os11g42860(LOC_Os11g42860.1) | INTRON |