Detailed information of SNP:
|
SNP ID:
sf1125353623(Gbrowse)
Chromosome: chr11 Position: 25353623 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.35% | 34.65% |
| All Indica | 799 | 45.56% | 54.44% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125353623 | G->A | INTERGENIC | None |