Detailed information of SNP:
|
SNP ID:
sf1125353843(Gbrowse)
Chromosome: chr11 Position: 25353843 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.06% | 37.94% |
| All Indica | 798 | 40.85% | 59.15% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 212 | 21.23% | 78.77% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125353843 | C->T | INTERGENIC | None |