Detailed information of SNP:
|
SNP ID:
sf1125354887(Gbrowse)
Chromosome: chr11 Position: 25354887 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 67.14% | 32.86% |
| All Indica | 790 | 47.97% | 52.03% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 373 | 57.10% | 42.90% |
| Indica II | 209 | 30.14% | 69.86% |
| Indica Intermediate | 208 | 49.52% | 50.48% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125354887 | G->A | INTERGENIC | None |