Detailed information of SNP:
|
SNP ID:
sf1125356386(Gbrowse)
Chromosome: chr11 Position: 25356386 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 84.70% | 15.30% |
| All Indica | 784 | 78.57% | 21.43% |
| All Japonica | 493 | 95.94% | 4.06% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 372 | 90.86% | 9.14% |
| Indica II | 206 | 84.47% | 15.53% |
| Indica Intermediate | 206 | 50.49% | 49.51% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 90 | 84.44% | 15.56% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125356386 | C->T | INTERGENIC | None |