Detailed information of SNP:
|
SNP ID:
sf1125368286(Gbrowse)
Chromosome: chr11 Position: 25368286 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.61% | 35.39% |
| All Indica | 794 | 51.76% | 48.24% |
| All Japonica | 496 | 81.45% | 18.55% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 373 | 25.20% | 74.80% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 208 | 70.67% | 29.33% |
| Temperate Japonica | 334 | 77.84% | 22.16% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125368286 | G->A | LOC_Os11g42890(LOC_Os11g42890.1) | UTR_3_PRIME |