Detailed information of SNP:
|
SNP ID:
sf1125371181(Gbrowse)
Chromosome: chr11 Position: 25371181 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 88.01% | 11.99% |
| All Indica | 792 | 85.35% | 14.65% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 373 | 85.25% | 14.75% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125371181 | G->A | INTERGENIC | None |