Detailed information of SNP:
|
SNP ID:
sf1125371933(Gbrowse)
Chromosome: chr11 Position: 25371933 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 52.28% | 47.72% |
| All Indica | 787 | 53.11% | 46.89% |
| All Japonica | 494 | 51.01% | 48.99% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 372 | 47.58% | 52.42% |
| Indica II | 209 | 56.46% | 43.54% |
| Indica Intermediate | 206 | 59.71% | 40.29% |
| Temperate Japonica | 334 | 41.02% | 58.98% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125371933 | G->C | INTERGENIC | None |