Detailed information of SNP:
|
SNP ID:
sf1125372148(Gbrowse)
Chromosome: chr11 Position: 25372148 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 58.77% | 41.23% |
| All Indica | 792 | 63.13% | 36.87% |
| All Japonica | 495 | 50.51% | 49.49% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 62.57% | 37.43% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 206 | 76.70% | 23.30% |
| Temperate Japonica | 334 | 60.78% | 39.22% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125372148 | C->T | INTERGENIC | None |