Detailed information of SNP:
|
SNP ID:
sf1125373453(Gbrowse)
Chromosome: chr11 Position: 25373453 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.41% | 36.59% |
| All Indica | 795 | 64.03% | 35.97% |
| All Japonica | 496 | 65.52% | 34.48% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 373 | 87.13% | 12.87% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 209 | 47.85% | 52.15% |
| Temperate Japonica | 335 | 80.30% | 19.70% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125373453 | C->T | INTERGENIC | None |