Detailed information of SNP:
|
SNP ID:
sf1125375062(Gbrowse)
Chromosome: chr11 Position: 25375062 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1274 | 59.73% | 40.27% |
| All Indica | 672 | 46.13% | 53.87% |
| All Japonica | 494 | 81.78% | 18.22% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 364 | 42.03% | 57.97% |
| Indica II | 119 | 35.29% | 64.71% |
| Indica Intermediate | 189 | 60.85% | 39.15% |
| Temperate Japonica | 334 | 80.84% | 19.16% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 0 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1125375062 | G->T | LOC_Os11g42900(LOC_Os11g42900.1) | INTRON |